Web Links: Phosphorylation

Below is a table of useful links related to this area of the website. All links will open in a new window. If you have any suggestions for websites that should be featured here, please contact us at info@kinexus.ca.

Site Host Features
PredikinUniversity of Queenland, AustraliaPredicts the most likely phosphorylation site for a specific protein kinase or the most likely protein kinase for a phosphorylation site.
GPS – Group-based PredictionCookoo Workgroup at Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences at the University of Science & Technology of China, Hefei, ChinaPredicts kinase-specific phosphorylation sites for 408 human PKs in hierarchy. It also provides information on human SNP's that link to phospho-sites.
HPRD PhosphoMotif FinderPandey Lab at Johns Hopkins University and the Institute of Bioinformatics, USAThe Human Protein Reference Database PhosphoMotif Finder predicts the location of phosphorylation sites targeted by kinases, phosphatases and binding proteins.
ScanSiteMassachusetts Institute of Technology, Beth Israel Deaconess Medical Center, St. Jude's Children's Research Hospital, MA, USAScansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Swiss Protein DatabaseSwiss Institute of Bioinformatics, Geneva, SwitzerlandSwissProt is a curated protein sequence database provided by the ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB). It strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases.
PhosphoPepSwiss Federal Institute of Technology, Zurich, SwitzerlandPhosphoPep contains over 10,000 high quality phosphorylation sites mapping to nearly 4,600 phosphoproteins in diverse organisms, including over 3500 phospho-sites from Drosophila melanogaster. Much of the data has been generated from Aebersold group at the Swiss Federal Institute of Technology in collaboration with the Functional Genomics Center in Zurich, Switzerland and the Institute for Systems Biology in Seattle, Washington, USA.
PHOSIDADept. of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, GermanyPHOSIDA (PHOsphorylation SIte Database) allows retrieval of phosphorylation data of any protein of interest. It lists phosphorylation sites associated with particular projects and proteomes or, alternatively, displays phosphorylation sites found for any protein or protein group of interest.
PhosphoElmEuropean Molecular Biology Lab - European Bioinformatics Institute, Hixton, UK, Cellzome and othersThe Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in eukaryotic proteins. The entries, manually annotated and based on scientific literature, provide information about the phosphorylated proteins and the exact position of known phosphorylated instances.
PhosphoSiteCell Signaling Technology Company, Beverly, MA, USAPhosphoSite contains a very comprehensive list of many of the known human and mouse protein phosphorylation sites with very extensive supporting information.